European Bioinformatics Institute | EMBL-EBI Tech Stack

Biological data infrastructure and bioinformatics tools for life sciences research

Software Development Hinxton, Cambridge 501–1,000 employees Founded 1994 Educational

EMBL-EBI operates large-scale biological databases and computational tools serving the global research community. The stack reflects deep infrastructure maturity—Kubernetes, Terraform, PostgreSQL, MongoDB, Oracle—paired with domain-specific tools (UniProt, Ensembl, AlphaFold). Active adoption of React, Docker, and Jenkins alongside ongoing database migrations and cluster optimization points to modernization of legacy systems while scaling genomic data delivery across distributed data centers.

Tech Stack 62 technologies

Core StackTerraform Kubernetes GitLab CI/CD MySQL MongoDB Redis gRPC GraphQL PostgreSQL Oracle SQL Server Python Puppet Linux ServiceNow WordPress C++ Rust TypeScript REST Delphix Windows AlphaFold Microsoft Office Google Workspace UniProt Perl Ensembl WebGL WebAssembly+31 more

AdoptingReact Docker Kubernetes GitLab CI/CD Jenkins

What European Bioinformatics Institute | EMBL-EBI Is Building

◆Challenges

Scaling genomic data delivery
Unified resource for spatial transcriptomics data
Improving high-availability cluster performance
Research management service improvement
Financial forecasting streamlining
Performance tuning and query optimisation
Multi-terabyte database support across distributed data centres
Automation of repetitive tasks
Reducing technical debt
Enhancing user self-service

▲Active Projects

Beta.ensembl.org
Software and data production pipelines for uniprot database
Adoption of new reporting tools
Developing roadmap for rmo services
Database migrations
Database backend improvement
Digital employee experience enhancement
Itsm process governance
Automation of repetitive tasks
Modular training content

Hiring Activity

Accelerating20 roles · 10 in 30d

Department

Engineering

Research

Data

Training

Support

Seniority

Mid

Senior

Lead

Manager

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About European Bioinformatics Institute | EMBL-EBI

EMBL-EBI is a research institute and educational organization based in Hinxton, Cambridge, providing biological data resources and bioinformatics software to scientists worldwide. The organization maintains core databases including UniProt and Ensembl, offers computational biology training, and develops tools for molecular-level data exploration. Operations span software development, research, data engineering, and training delivery, with current focus on scaling multi-terabyte database infrastructure, improving query performance, and enhancing user self-service capabilities.

HeadquartersHinxton, Cambridge

Company Size501–1,000 employees

Founded1994

Hiring MarketsUnited Kingdom

Frequently Asked Questions

What tech stack does EMBL-EBI use?

Kubernetes, PostgreSQL, MongoDB, Oracle, Python, Terraform, GitLab CI/CD, REST/gRPC/GraphQL APIs, C++, Rust, and domain tools like UniProt, Ensembl, and AlphaFold. Currently adopting React and Docker.

What is EMBL-EBI working on?

Core projects include beta.ensembl.org, UniProt data pipelines, database migrations, cluster performance tuning, scaling genomic data delivery, and building a unified resource for spatial transcriptomics data.